All these lists are by several editors.

3voor12 published a top 12 (http://3voor12.vpro.nl/artikelen/artikel/38494286):

01. LCD Soundsystem - Sound Of Silver
02. Battles - Mirrored
03. Radiohead - In Rainbows
04. Arctic Monkeys - Favourite Worst Nightmare
05. Justice - †
06. Patrick Watson - Close To Paradis
07. Grinderman - Grinderman
08. M.I.A. - Kala
09. Arcade Fire - Neon Bible
10. Digitalism - Idealism
11. Burial - Untrue
12. Spoon - Ga Ga Ga Ga Ga

KindaMuzik published a 7 best and 14 runner up list in no particular order (http://www.kindamuzik.net/achtergrond/de-eenentwintig/de-eenentwintig-2007):

Best:
Justice - Cross
Dillinger Escape Plan - Ire Works
Beirut - The Flying Club Cub
Editors - An End Has A Start
Battles - Mirrored
Interpol - Our Love To Admire
Lucky Fonz III - Life Is Short

Runner-ups:
LCD Soundsystem - Sound of Silver
Arctic Monkeys - Favourite Worst Nightmare
High on Fire - Death is this Communion
Radiohead - In Rainbows
Vic Chesnutt - North Star Deserter
Klaxons - Myths of the Near Future
Amy Winehouse - Back To Black
The Field - From Here We Go Sublime
Arcade Fire - Neon Bible
Burial - Untrue
Grinderman - Grinderman
Bloc Party - A Weekend In The City
Gui Boratto - Chromophobia
Hermano - ...Into The Exam Room

3voor12 also published a top 100 songs (http://3voor12.vpro.nl/artikelen/artikel/38318293):

1 Editors - Smokers Outside The Hospital Doors
2 30 Seconds To Mars - The Kill
3 Pete Philly & Perquisite - Time Flies
4 C-Mon & Kypski ft. Pete Philly - Make My Day
5 Arctic Monkeys - Brianstorm
6 Foo Fighters - The Pretender
7 Moke - Last Chance
8 Snow Patrol - Shut Your Eyes
9 Damien Rice - Nine Crimes
10 Interpol - The Heinrich Maneuver
11 Amy Winehouse - Rehab
12 Radiohead - 15 Step
13 Kaiser Chiefs - Ruby
14 Arcade Fire - Keep The Car Running
15 Justice - D.A.N.C.E.
16 Spinvis - Wespen Op De Appeltaart
17 Kate Nash - Foundations
18 All Missing Pieces - I Want You To Know
19 Peter, Bjorn & John feat. Victoria Bergsman - Young Folks
20 White Stripes - Icky Thump
21 Charlie Dee - I Know
22 Mika - Grace Kelly
23 Beirut - Nantes
24 Klaxons - Golden Skans
25 Shins - Phantom Limb
26 Jeremy's - Saturday
27 Opposites ft. Dio & Willie Wartaal - Dom, Lomp & Famous
28 Battles - Atlas
29 Maxïmo Park - Our Velocity
30 Patrick Watson - The Great Escape
31 Cold War Kids - Hang Me Up To Dry
32 De Jeugd Van Tegenwoordig - Shenkie
33 Kooks - Ooh La
34 LCD Soundsystem - North American Scum
35 Gossip - Standing In The Way Of Control
36 Wombats - Let's Dance To Joy Division
37 Queens Of The Stone Age - Sick, Sick, Sick
38 Heideroosjes - Lekker Belangrijk
39 Greenday - Working Class Hero
40 Killers - Bones
41 Fictionplane - Two Sisters
42 Chemical Brothers - Do It Again
43 Johan - She's Got A Way With Men
44 Babyshambles - Delivery
45 Alamo Race Track - Northern Territory
46 Kings Of Leon - Charmer
47 Bloc Party - The Prayer
48 Fall Out Boy - This Ain't A Scene, It's An Arms Race
49 Grinderman - No Pussy Blues
50 Linkin Park - Bleed It Out
51 Red Hot Chili Peppers - Desecration Smile
52 Just Jack - Starz In Their Eyes
53 Dan Le Sac Vs Scroobius Pip - Thou Shalt Always Kill
54 The Good, The Bad & The Queen - Kingdom Of Doom
55 Coparck - A Good Year For The Robots
56 Band Of Horses - Is There A Ghost
57 Feist - 1 2 3 4
58 Goose - Low Mode
59 Within' Temptation - What Have I Done
60 Manic Street Preachers ft. Nina Persson - Your Love Alone
61 Bright Eyes - Four Winds
62 Check 1-2 - I Won't Cry
63 Róisín Murphy - Overpowered
64 Kanye West feat. Daft Punk - Stronger
65 View - Same Jeans
66 CocRosie - Rainbowarriors
67 Rihanna - My Umbrella
68 Modest Mouse - Dashboard
69 Enter Shikari - Sorry You're Not A Winner
70 Kasabian - Shoot The Runner
71 Girls - Best Shot
72 Digitalism - Pogo
73 National - Mistaken For Strangers
74 Aux Raus - Fall
75 Zita Swoon - I Feel Alive In The City
76 Timbaland - The Way I Are
77 Hives - Tick Tick Boom
78 Loney, Dear - Saturday Waits
79 Iron & Wine - Boy With A Coin
80 M.I.A. - Jimmy
81 Typhoon feat. Neske Beks - Sprokkeldagen
82 Prince - Guitar
83 Hard-Fi - Suburban Knights
84 Björk - Earth Intruders
85 Nine Inch Nails - Survivalism
86 Pigeon Detectives - I'm Not Sorry
87 Jamie T. - Sheila
88 UNKLE feat. Ian Astbury - Burn My Shadow
89 Jaap Boots - Kutwijf
90 Rifles - Peace & Quiet
91 Smashing Pumpkins - Tarantula
92 Air Traffic - Never Even Told Me Her Name
93 Lilian Hak - Stitch My Name
94 Razorlight - Before I Fall To Pieces
95 Sticks & Delic - Spaanse Vlieg
96 Lucky Fonz III - Once I Was A Lady
97 Lefties Soul Connection - Fais Do-Do
98 Okkervil River - Our Life Is Not A Movie Or May Be
99 Samim - Heater
100 Animal Collective - Peacebone

A horribly list I might add. But oh well.

They've also made lists in previous years.

Top 7 and 14 runner ups from KindaMuzik of 2006 (http://www.kindamuzik.net/achtergrond/de-eenentwintig/de-eenentwintig-2006)

Best:
Junior Boys - So This Is Goodbye
Bob Dylan - Modern Times
Opgezwolle - Eigen Wereld
Wolfmother - Wolfmother
Arctic Monkeys - Whatever People Say I Am, That's What I'm Not
CSS - Cansei de Ser Sexy
Wolf Eyes - Human Animal

Runner-ups:
The Raconteurs - Broken Boy Soldiers
TV On The Radio - Return To Cookie Mountain
Joanna Newsom - Ys
Johan - Thx Jhn
Goose - Bring It On
The Knife - Silent Shout
The Veils - Nux Vomica
Scott Walker - The Drift
Kode9 + The Spaceape - Memories Of The Future
Espers - II
Jay Reatard - Blood Visions
Mastodon - Blood Mountain
Lily Allen - Alright, Still
The Kift - 7

Top 7 and 14 runner ups from KindaMuzik of 2005 (http://www.kindamuzik.net/artikel.php?id=11466):

Best:
M.I.A. - Arular
Death From Above 1979 - You're A Woman - I Am A Machine
Deus - Pocket Revolution
Animal Collective - Feels
De Jeugd van Tegenwoordig - Parels Voor de Zwijnen
Anthony and the Johnsons - I Am A Bird Now
Vic Chesnutt - Ghetto Bells

Runner-ups:
Bloc Party - Silent Alarm
Sufjan Stevens - Illinois
LCD Soundsystem - LCD Soundsystem
System Of A Down - Mezmerize
Sunn O))) - Black One
Maxïmo Park - A Certain Trigger
Jamie Lidell - Multiply
Opeth - Ghost Reveries
Kanye West - Late Registration
Josh Rouse - Nashville
High On Fire - Blessed Black Wings
Hard-Fi - Stars Of CCTV
Superpitcher - Today
Earth - Hex: Or Printing In The Infernal Method

More lists from these publications when I find them.. the sites are horrible.